Trolling Motor Shaft Length

A shaft that's too short leaves the motor near the surface, where Minn Kota says it can cavitate and make noise. One measurement, plus the chart from your motor's maker, gets the length right.

The prop needs to sit well under the surface, even in a chop.
Measure from the mount to the water, add for conditions, then read your maker's chart.

Find where the motor mounts

Use the spot on the bow or transom where the motor's mount will sit.

Measure to the water

Measure straight down from that mounting surface to the top of the water. Minn Kota, MotorGuide and Garmin all start from this number.

Add for how you fish

Minn Kota adds 5 inches for rough water and 9 inches for a bow-mount Hand Control motor, plus another 12 inches if you will steer a hand-controlled motor while standing. Garmin adds 8 inches if you regularly run into a lot of waves.

Read your maker's chart

Look up the total in the chart for the brand you are buying. Each maker publishes its own, so don't take one brand's chart to another brand's motor.

Measure from the surface where the motor mounts, on the bow or transom, straight down to the top of the water. Add any allowance your motor's maker lists for rough water, then read that maker's shaft chart.
Minn Kota's rule of thumb is at least 12 inches of water over the top of the lower unit. MotorGuide's X5 manual says the propeller blades should be fully submerged 6 to 12 inches below the surface.
The motor sits too close to the surface. Minn Kota says it can cavitate and make fish-spooking noise.
Yes, by your maker's figure. Minn Kota adds 5 inches for rough water, and Garmin adds 8 inches if you regularly fish in a lot of waves.
In Minn Kota's chart, 30 inches for 0 to 10 inches from transom to waterline, 36 inches for 10 to 16, and 42 inches for 16 to 22.
On most Minn Kota motors, yes. Minn Kota recommends an Authorized Service Center, since doing it yourself voids the warranty. Ulterra, Ulterra QUEST and Riptide Instinct QUEST shafts can't be shortened.